J3_9XFL_016
3D structure
- PDB id
- 9XFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In vitro structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9XFL|1|I|A|2518, 9XFL|1|I|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9XFL_016 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1841
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9XFL|1|I|C|2517
9XFL|1|I|A|2518
9XFL|1|I|U|2519
9XFL|1|I|C|2520
*
9XFL|1|I|G|2545
9XFL|1|I|U|2546
9XFL|1|I|A|2547
*
9XFL|1|I|U|2561
9XFL|1|I|U|2562
9XFL|1|I|U|2563
9XFL|1|I|A|2564
9XFL|1|I|A|2565
9XFL|1|I|A|2566
9XFL|1|I|G|2567
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL3
- Chain S
- Large ribosomal subunit protein uL14
Coloring options: