J3_9XWO_029
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9XWO|1|a|A|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9XWO_029 not in the Motif Atlas
- Homologous match to J3_7A0S_009
- Geometric discrepancy: 0.2195
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9XWO|1|a|C|2091
9XWO|1|a|U|2092
9XWO|1|a|G|2093
*
9XWO|1|a|C|2196
9XWO|1|a|U|2197
9XWO|1|a|A|2198
9XWO|1|a|A|2199
9XWO|1|a|C|2200
*
9XWO|1|a|G|2223
9XWO|1|a|G|2224
9XWO|1|a|A|2225
9XWO|1|a|C|2226
9XWO|1|a|A|2227
9XWO|1|a|G|2228
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
- Chain h
- 50S ribosomal protein L9
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: