J3_9Y4G_002

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y4G_002 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.1281

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9Y4G|1|A5|U|380
9Y4G|1|A5|U|381
9Y4G|1|A5|G|382
9Y4G|1|A5|A|383
9Y4G|1|A5|A|384
9Y4G|1|A5|A|385
9Y4G|1|A5|A|386
9Y4G|1|A5|G|387
*
9Y4G|1|A5|C|414
9Y4G|1|A5|G|415
*
9Y4G|1|A8|C|19
9Y4G|1|A8|A|20

Current chains

Chain A5

LSU-alpha rRNA

Chain A8

5.8S rRNA (157-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26

Chain Cl

60S ribosomal protein L39