J3_9Y4G_017

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y4G_017 not in the Motif Atlas

Homologous match to J3_9PN5_016

Geometric discrepancy: 0.2333

The information below is about J3_9PN5_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.3

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9Y4G|1|A6|U|2575
9Y4G|1|A6|G|2576
*
9Y4G|1|A6|C|2585
9Y4G|1|A6|G|2586
9Y4G|1|A6|A|2587
9Y4G|1|A6|C|2588
9Y4G|1|A6|C|2589
*
9Y4G|1|A6|G|2756
9Y4G|1|A6|A|2757

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CZ

60S ribosomal protein L27

Chain Cg

60S ribosomal protein L34