J3_9Y4G_032
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Y4G_032 not in the Motif Atlas
- Homologous match to J3_9PN5_032
- Geometric discrepancy: 0.2133
- The information below is about J3_9PN5_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.4
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Y4G|1|B2|A|816
9Y4G|1|B2|G|817
9Y4G|1|B2|A|818
9Y4G|1|B2|G|819
*
9Y4G|1|B2|C|829
9Y4G|1|B2|A|830
9Y4G|1|B2|G|831
*
9Y4G|1|B2|C|843
9Y4G|1|B2|U|844
9Y4G|1|B2|G|845
9Y4G|1|B2|G|846
9Y4G|1|B2|A|847
9Y4G|1|B2|U|848
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S4, X isoform
- Chain AJ
- 40S ribosomal protein S9
- Chain AY
- 40S ribosomal protein S24
Coloring options: