J3_9Y4G_035

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|B2|C|1218
9Y4G|1|B2|C|1219
9Y4G|1|B2|A|1220
9Y4G|1|B2|G|1221
*
9Y4G|1|B2|C|1645
9Y4G|1|B2|C|1646
9Y4G|1|B2|A|1647
9Y4G|1|B2|G|1648
9Y4G|1|B2|U|1649
9Y4G|1|B2|A|1650
9Y4G|1|B2|A|1651
*
9Y4G|1|B2|U|1673
9Y4G|1|B2|G|1674
9Y4G|1|B2|A|1675
9Y4G|1|B2|U|1676
9Y4G|1|B2|U|1677
9Y4G|1|B2|A|1678
9Y4G|1|B2|A|1679
9Y4G|1|B2|G|1680

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S5

Chain AQ

40S ribosomal protein S16

Chain Ac

40S ribosomal protein S28