J3_9Y4G_043

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9Y4G|1|B2|U|1535, 9Y4G|1|B2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|B2|C|1532
9Y4G|1|B2|A|1533
9Y4G|1|B2|C|1534
9Y4G|1|B2|U|1535
9Y4G|1|B2|G|1536
*
9Y4G|1|B2|C|1597
9Y4G|1|B2|G|1598
9Y4G|1|B2|U|1599
9Y4G|1|B2|G|1600
9Y4G|1|B2|A|1601
9Y4G|1|B2|U|1602
9Y4G|1|B2|G|1603
9Y4G|1|B2|G|1604
*
9Y4G|1|B2|C|1635
9Y4G|1|B2|G|1636
9Y4G|1|B2|A|1637
9Y4G|1|B2|G|1638

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S5

Chain AS

40S ribosomal protein S18

Chain AT

40S ribosomal protein S19

Chain AZ

40S ribosomal protein S25