J3_9Y79_007

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1238

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9Y79|1|D|C|936
9Y79|1|D|A|937
9Y79|1|D|A|938
9Y79|1|D|G|939
*
9Y79|1|D|C|1344
9Y79|1|D|U|1345
9Y79|1|D|A|1346
9Y79|1|D|G|1347
9Y79|1|D|U|1348
9Y79|1|D|A|1349
9Y79|1|D|A|1350
*
9Y79|1|D|U|1372
9Y79|1|D|G|1373
9Y79|1|D|A|1374
9Y79|1|D|A|1375
9Y79|1|D|U|1376
9Y79|1|D|A|1377
9Y79|1|D|C|1378
9Y79|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

Small ribosomal subunit protein uS7

Chain O

Small ribosomal subunit protein uS9