J3_9Y79_011

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9Y79|1|D|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1883

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9Y79|1|D|C|990
9Y79|1|D|U|991
9Y79|1|D|U|992
9Y79|1|D|G|993
9Y79|1|D|A|994
9Y79|1|D|C|995
9Y79|1|D|A|996
9Y79|1|D|U|997
*
9Y79|1|D|A|1044
9Y79|1|D|C|1045
9Y79|1|D|A|1046
9Y79|1|D|G|1047
*
9Y79|1|D|C|1210
9Y79|1|D|U|1211
9Y79|1|D|U|1212
9Y79|1|D|A|1213
9Y79|1|D|C|1214
9Y79|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS14