J3_9Y79_015
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9Y79|1|D|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Y79_015 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.207
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9Y79|1|D|U|1116
9Y79|1|D|A|1117
9Y79|1|D|U|1118
*
9Y79|1|D|A|1155
9Y79|1|D|G|1156
9Y79|1|D|A|1157
9Y79|1|D|C|1158
9Y79|1|D|U|1159
9Y79|1|D|G|1160
9Y79|1|D|C|1161
*
9Y79|1|D|G|1175
9Y79|1|D|A|1176
9Y79|1|D|G|1177
9Y79|1|D|G|1178
9Y79|1|D|A|1179
9Y79|1|D|A|1180
9Y79|1|D|G|1181
9Y79|1|D|G|1182
9Y79|1|D|U|1183
9Y79|1|D|G|1184
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain M
- Small ribosomal subunit protein uS7
- Chain O
- Small ribosomal subunit protein uS9
- Chain P
- Small ribosomal subunit protein uS10
- Chain S
- Small ribosomal subunit protein uS14
Coloring options: