J3_9Y79_016

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9Y79|1|D|U|1240, 9Y79|1|D|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_016 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.1853

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9Y79|1|D|C|1237
9Y79|1|D|A|1238
9Y79|1|D|A|1239
9Y79|1|D|U|1240
9Y79|1|D|G|1241
*
9Y79|1|D|C|1296
9Y79|1|D|G|1297
9Y79|1|D|U|1298
9Y79|1|D|A|1299
9Y79|1|D|G|1300
9Y79|1|D|U|1301
9Y79|1|D|C|1302
9Y79|1|D|C|1303
*
9Y79|1|D|G|1334
9Y79|1|D|U|1335
9Y79|1|D|C|1336
9Y79|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS7

Chain X

Small ribosomal subunit protein uS13