J3_9Y79_023

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_023 not in the Motif Atlas

Homologous match to J3_1MMS_002

Geometric discrepancy: 0.2338

The information below is about J3_1MMS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.2

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

4

Unit IDs

9Y79|1|a|G|1055
9Y79|1|a|G|1056
9Y79|1|a|A|1057
*
9Y79|1|a|U|1081
9Y79|1|a|U|1082
9Y79|1|a|U|1083
9Y79|1|a|A|1084
9Y79|1|a|A|1085
9Y79|1|a|A|1086
9Y79|1|a|G|1087
*
9Y79|1|a|C|1102
9Y79|1|a|A|1103
9Y79|1|a|C|1104

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36