J3_9Y79_024

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9Y79|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_024 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2057

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9Y79|1|a|C|1298
9Y79|1|a|G|1299
9Y79|1|a|G|1300
9Y79|1|a|A|1301
9Y79|1|a|A|1302
9Y79|1|a|G|1303
*
9Y79|1|a|C|1625
9Y79|1|a|A|1626
9Y79|1|a|G|1627
*
9Y79|1|a|C|1639
9Y79|1|a|A|1640
9Y79|1|a|A|1641
9Y79|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains