J3_9Y79_027

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_027 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1143

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9Y79|1|a|G|1424
9Y79|1|a|G|1425
9Y79|1|a|G|1426
9Y79|1|a|A|1427
9Y79|1|a|C|1428
9Y79|1|a|G|1429
*
9Y79|1|a|C|1564
9Y79|1|a|C|1565
*
9Y79|1|a|G|1568
9Y79|1|a|A|1569
9Y79|1|a|A|1570
9Y79|1|a|A|1571
9Y79|1|a|A|1572
9Y79|1|a|G|1573
9Y79|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2