J3_9YDD_005
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_005 not in the Motif Atlas
- Geometric match to J3_9PN5_005
- Geometric discrepancy: 0.0561
- The information below is about J3_9PN5_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.4
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|A|369
9YDD|1|A|U|370
9YDD|1|A|G|371
9YDD|1|A|A|372
9YDD|1|A|A|373
9YDD|1|A|A|374
9YDD|1|A|A|375
9YDD|1|A|G|376
*
9YDD|1|A|C|403
9YDD|1|A|G|404
*
9YDD|1|C|C|19
9YDD|1|C|U|20
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: