J3_9YDD_007
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 9YDD|1|A|A|607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_007 not in the Motif Atlas
- Homologous match to J3_9PN5_007
- Geometric discrepancy: 0.0564
- The information below is about J3_9PN5_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.3
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|A|U|502
9YDD|1|A|C|503
*
9YDD|1|A|G|588
9YDD|1|A|A|589
9YDD|1|A|G|590
9YDD|1|A|G|591
9YDD|1|A|A|592
9YDD|1|A|C|593
9YDD|1|A|U|594
9YDD|1|A|G|595
9YDD|1|A|C|596
9YDD|1|A|G|597
*
9YDD|1|A|C|606
9YDD|1|A|A|607
9YDD|1|A|A|608
9YDD|1|A|G|609
9YDD|1|A|G|610
9YDD|1|A|A|611
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LI
- 60S ribosomal protein L7-A
- Chain Lg
- 60S ribosomal protein L32
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