J3_9YDD_010
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|A|A|1065, 9YDD|1|A|U|1094, 9YDD|1|A|U|1095
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_010 not in the Motif Atlas
- Homologous match to J3_9SUM_010
- Geometric discrepancy: 0.4469
- The information below is about J3_9SUM_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_22278.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|A|U|986
9YDD|1|A|U|987
*
9YDD|1|A|A|1062
9YDD|1|A|G|1063
9YDD|1|A|A|1064
9YDD|1|A|A|1065
9YDD|1|A|G|1066
*
9YDD|1|A|C|1092
9YDD|1|A|A|1093
9YDD|1|A|U|1094
9YDD|1|A|U|1095
9YDD|1|A|U|1096
9YDD|1|A|G|1097
9YDD|1|A|A|1098
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LI
- 60S ribosomal protein L7-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
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