J3_9YDD_017
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 9YDD|1|A|U|2514
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_017 not in the Motif Atlas
- Homologous match to J3_9SUM_018
- Geometric discrepancy: 0.0936
- The information below is about J3_9SUM_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63968.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|A|A|2432
9YDD|1|A|U|2433
9YDD|1|A|U|2434
9YDD|1|A|G|2435
*
9YDD|1|A|C|2512
9YDD|1|A|U|2513
9YDD|1|A|U|2514
9YDD|1|A|A|2515
9YDD|1|A|U|2516
9YDD|1|A|U|2517
*
9YDD|1|A|A|2590
9YDD|1|A|A|2591
9YDD|1|A|G|2592
9YDD|1|A|A|2593
9YDD|1|A|C|2594
9YDD|1|A|A|2595
9YDD|1|A|U|2596
9YDD|1|A|U|2597
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: