J3_9YDD_018
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 9YDD|1|A|G|2549, 9YDD|1|A|U|2550, 9YDD|1|A|U|2551, 9YDD|1|A|C|2552, 9YDD|1|A|U|2553, 9YDD|1|A|A|2554, 9YDD|1|A|C|2560
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_018 not in the Motif Atlas
- Homologous match to J3_9PN5_019
- Geometric discrepancy: 0.1039
- The information below is about J3_9PN5_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60469.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9YDD|1|A|A|2529
9YDD|1|A|G|2530
9YDD|1|A|C|2531
9YDD|1|A|U|2532
*
9YDD|1|A|A|2547
9YDD|1|A|C|2548
9YDD|1|A|G|2549
9YDD|1|A|U|2550
9YDD|1|A|U|2551
9YDD|1|A|C|2552
9YDD|1|A|U|2553
9YDD|1|A|A|2554
9YDD|1|A|G|2555
9YDD|1|A|C|2556
9YDD|1|A|A|2557
9YDD|1|A|U|2558
9YDD|1|A|U|2559
9YDD|1|A|C|2560
9YDD|1|A|A|2561
9YDD|1|A|A|2562
9YDD|1|A|G|2563
*
9YDD|1|A|U|2578
9YDD|1|A|G|2579
9YDD|1|A|A|2580
9YDD|1|A|U|2581
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: