J3_9YDD_027

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9YDD|1|E|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YDD_027 not in the Motif Atlas

Homologous match to J3_9SUM_027

Geometric discrepancy: 0.0586

The information below is about J3_9SUM_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F

Number of instances in this motif group

7

Unit IDs

9YDD|1|E|A|41
9YDD|1|E|G|42
9YDD|1|E|A|43
9YDD|1|E|U|44
9YDD|1|E|U|45
9YDD|1|E|A|46
9YDD|1|E|A|47
9YDD|1|E|G|48
*
9YDD|1|E|C|431
9YDD|1|E|G|432
9YDD|1|E|C|433
9YDD|1|E|G|434
9YDD|1|E|C|435
9YDD|1|E|A|436
9YDD|1|E|A|437
9YDD|1|E|A|438
9YDD|1|E|U|439
*
9YDD|1|E|A|464
9YDD|1|E|G|465
9YDD|1|E|U|466

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A