J3_9YDD_032
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9YDD|1|E|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_032 not in the Motif Atlas
- Homologous match to J3_9SUM_031
- Geometric discrepancy: 0.1604
- The information below is about J3_9SUM_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_41498.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9YDD|1|E|C|1037
9YDD|1|E|U|1038
9YDD|1|E|A|1039
*
9YDD|1|E|U|1079
9YDD|1|E|U|1080
9YDD|1|E|A|1081
9YDD|1|E|C|1082
9YDD|1|E|G|1083
*
9YDD|1|E|C|1090
9YDD|1|E|A|1091
9YDD|1|E|A|1092
9YDD|1|E|A|1093
9YDD|1|E|G|1094
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S0-A
- Chain Sa
- 40S ribosomal protein S21-A
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Se
- Small ribosomal subunit protein eS26B
- Chain Sf
- 40S ribosomal protein S27-A
Coloring options: