J3_9YDE_012
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9YDE|1|A|U|1840, 9YDE|1|A|A|1841
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDE_012 not in the Motif Atlas
- Homologous match to J3_9PN5_013
- Geometric discrepancy: 0.0558
- The information below is about J3_9PN5_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9YDE|1|A|G|1488
9YDE|1|A|A|1489
9YDE|1|A|A|1490
9YDE|1|A|A|1491
*
9YDE|1|A|U|1837
9YDE|1|A|G|1838
9YDE|1|A|A|1839
9YDE|1|A|U|1840
9YDE|1|A|A|1841
9YDE|1|A|A|1842
9YDE|1|A|C|1843
*
9YDE|1|A|G|1852
9YDE|1|A|U|1853
9YDE|1|A|C|1854
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Li
- 60S ribosomal protein L34-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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