J3_9YDE_037

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YDE_037 not in the Motif Atlas

Homologous match to J3_9PN5_040

Geometric discrepancy: 0.0863

The information below is about J3_9PN5_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.7

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9YDE|1|E|U|1293
9YDE|1|E|G|1294
*
9YDE|1|E|U|1303
9YDE|1|E|G|1304
9YDE|1|E|U|1305
9YDE|1|E|C|1306
*
9YDE|1|E|G|1318
9YDE|1|E|A|1319
9YDE|1|E|U|1320
9YDE|1|E|A|1321
9YDE|1|E|A|1322

Current chains

Chain E

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S17-B

Chain SP

40S ribosomal protein S0-A

Chain SR

40S ribosomal protein S2