J3_9YPG_028

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9YPG|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YPG_028 not in the Motif Atlas

Homologous match to J3_9PN5_028

Geometric discrepancy: 0.0504

The information below is about J3_9PN5_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F

Number of instances in this motif group

7

Unit IDs

9YPG|1|9|A|40
9YPG|1|9|G|41
9YPG|1|9|A|42
9YPG|1|9|U|43
9YPG|1|9|U|44
9YPG|1|9|A|45
9YPG|1|9|A|46
9YPG|1|9|G|47
*
9YPG|1|9|C|479
9YPG|1|9|G|480
9YPG|1|9|C|481
9YPG|1|9|G|482
9YPG|1|9|C|483
9YPG|1|9|A|484
9YPG|1|9|A|485
9YPG|1|9|A|486
9YPG|1|9|U|487
*
9YPG|1|9|A|512
9YPG|1|9|G|513
9YPG|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12

Chain jj

GTP-binding protein 1