J3_9YPO_017

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|A|2598
9YPO|1|5|G|2599
9YPO|1|5|A|2600
9YPO|1|5|A|2601
9YPO|1|5|G|2602
*
9YPO|1|5|C|2737
9YPO|1|5|C|2738
*
9YPO|1|5|G|2742
9YPO|1|5|A|2743
9YPO|1|5|A|2744
9YPO|1|5|A|2745
9YPO|1|5|A|2746
9YPO|1|5|U|2747

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain g

Large ribosomal subunit protein eL34

Chain p

eL43