J3_9YPO_028

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9YPO|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|A|40
9YPO|1|9|G|41
9YPO|1|9|A|42
9YPO|1|9|U|43
9YPO|1|9|U|44
9YPO|1|9|A|45
9YPO|1|9|A|46
9YPO|1|9|G|47
*
9YPO|1|9|C|479
9YPO|1|9|G|480
9YPO|1|9|C|481
9YPO|1|9|G|482
9YPO|1|9|C|483
9YPO|1|9|A|484
9YPO|1|9|A|485
9YPO|1|9|A|486
9YPO|1|9|U|487
*
9YPO|1|9|A|512
9YPO|1|9|G|513
9YPO|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12

Chain jj

GTP-binding protein 1