J3_9YPY_029

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9YPY|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|9|A|40
9YPY|1|9|G|41
9YPY|1|9|A|42
9YPY|1|9|U|43
9YPY|1|9|U|44
9YPY|1|9|A|45
9YPY|1|9|A|46
9YPY|1|9|G|47
*
9YPY|1|9|C|479
9YPY|1|9|G|480
9YPY|1|9|C|481
9YPY|1|9|G|482
9YPY|1|9|C|483
9YPY|1|9|A|484
9YPY|1|9|A|485
9YPY|1|9|A|486
9YPY|1|9|U|487
*
9YPY|1|9|A|512
9YPY|1|9|G|513
9YPY|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12