J3_9YPZ_028
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9YPZ|1|9|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPZ_028 not in the Motif Atlas
- Homologous match to J3_9PN5_028
- Geometric discrepancy: 0.0534
- The information below is about J3_9PN5_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.3
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9YPZ|1|9|A|40
9YPZ|1|9|G|41
9YPZ|1|9|A|42
9YPZ|1|9|U|43
9YPZ|1|9|U|44
9YPZ|1|9|A|45
9YPZ|1|9|A|46
9YPZ|1|9|G|47
*
9YPZ|1|9|C|479
9YPZ|1|9|G|480
9YPZ|1|9|C|481
9YPZ|1|9|G|482
9YPZ|1|9|C|483
9YPZ|1|9|A|484
9YPZ|1|9|A|485
9YPZ|1|9|A|486
9YPZ|1|9|U|487
*
9YPZ|1|9|A|512
9YPZ|1|9|G|513
9YPZ|1|9|U|514
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- uS12
Coloring options: