J4_10PX_029

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

10PX|1|2a|G|576, 10PX|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_10PX_029 not in the Motif Atlas

Homologous match to J4_6CZR_013

Geometric discrepancy: 0.0891

The information below is about J4_6CZR_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.5

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

10PX|1|2a|G|575
10PX|1|2a|G|576
10PX|1|2a|G|577
*
10PX|1|2a|C|764
10PX|1|2a|G|765
10PX|1|2a|A|766
10PX|1|2a|A|767
10PX|1|2a|A|768
10PX|1|2a|G|769
*
10PX|1|2a|C|810
10PX|1|2a|C|811
10PX|1|2a|C|812
10PX|1|2a|U|813
10PX|1|2a|A|814
10PX|1|2a|A|815
10PX|1|2a|A|816
10PX|1|2a|C|817
10PX|1|2a|G|818
10PX|1|2a|A|819
10PX|1|2a|U|820
10PX|1|2a|G|821
*
10PX|1|2a|C|879
10PX|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17