J4_11FV_003
3D structure
- PDB id
- 11FV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 11FV|1|C|C|570, 11FV|1|C|A|809, 11FV|1|C|C|811, 11FV|1|C|A|813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11FV_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1987
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
11FV|1|C|G|569
11FV|1|C|C|570
11FV|1|C|G|571
*
11FV|1|C|C|758
11FV|1|C|G|759
11FV|1|C|A|760
11FV|1|C|A|761
11FV|1|C|A|762
11FV|1|C|G|763
*
11FV|1|C|C|804
11FV|1|C|C|805
11FV|1|C|G|806
11FV|1|C|U|807
11FV|1|C|A|808
11FV|1|C|A|809
11FV|1|C|A|810
11FV|1|C|C|811
11FV|1|C|G|812
11FV|1|C|A|813
11FV|1|C|U|814
11FV|1|C|G|815
*
11FV|1|C|C|873
11FV|1|C|C|874
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 3
- Small ribosomal subunit protein bS21
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- Small ribosomal subunit protein uS8
- Chain t
- 30S ribosomal protein S12
- Chain w
- Small ribosomal subunit protein uS15
- Chain y
- Small ribosomal subunit protein uS17
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