J4_11GG_010

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11GG_010 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0789

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

11GG|1|I|A|1772
11GG|1|I|A|1773
11GG|1|I|C|1774
11GG|1|I|U|1775
11GG|1|I|G|1776
*
11GG|1|I|C|1788
11GG|1|I|A|1789
11GG|1|I|C|1790
11GG|1|I|A|1791
11GG|1|I|G|1792
*
11GG|1|I|U|1827
11GG|1|I|G|1828
11GG|1|I|A|1829
11GG|1|I|C|1830
*
11GG|1|I|G|1975
11GG|1|I|U|1976
11GG|1|I|A|1977
11GG|1|I|A|1978
11GG|1|I|U|1979

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2