J4_11HV_003
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 11HV|1|28|A|2366, 11HV|1|28|U|2369, 11HV|1|28|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11HV_003 not in the Motif Atlas
- Homologous match to J4_8GLP_004
- Geometric discrepancy: 0.0515
- The information below is about J4_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11HV|1|28|C|2365
11HV|1|28|A|2366
11HV|1|28|A|2367
11HV|1|28|A|2368
11HV|1|28|U|2369
11HV|1|28|A|2370
11HV|1|28|U|2371
*
11HV|1|28|A|2389
11HV|1|28|G|2390
11HV|1|28|G|2391
*
11HV|1|28|C|2824
11HV|1|28|A|2825
11HV|1|28|U|2826
11HV|1|28|G|2827
11HV|1|28|U|2828
11HV|1|28|U|2829
*
11HV|1|28|A|3856
11HV|1|28|G|3857
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 19
- 60S ribosomal protein L19
- Chain 31
- 60S ribosomal protein L31
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