J4_11IQ_001

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

11IQ|1|18|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11IQ_001 not in the Motif Atlas

Homologous match to J4_9PN5_010

Geometric discrepancy: 0.1665

The information below is about J4_9PN5_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.4

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

4

Unit IDs

11IQ|1|18|C|98
11IQ|1|18|A|99
11IQ|1|18|U|100
11IQ|1|18|U|101
11IQ|1|18|A|102
11IQ|1|18|A|103
11IQ|1|18|A|104
11IQ|1|18|U|105
11IQ|1|18|C|106
*
11IQ|1|18|G|355
11IQ|1|18|C|356
11IQ|1|18|C|357
*
11IQ|1|18|G|405
11IQ|1|18|U|406
11IQ|1|18|G|407
11IQ|1|18|A|408
11IQ|1|18|C|409
*
11IQ|1|18|G|431
11IQ|1|18|G|432

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain RR

40S ribosomal protein S23

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8