J4_11IQ_002

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

11IQ|1|18|A|672, 11IQ|1|18|A|1083, 11IQ|1|18|C|1085, 11IQ|1|18|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11IQ_002 not in the Motif Atlas

Homologous match to J4_9PN5_011

Geometric discrepancy: 0.0822

The information below is about J4_9PN5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.3

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

6

Unit IDs

11IQ|1|18|A|671
11IQ|1|18|A|672
11IQ|1|18|G|673
*
11IQ|1|18|C|1032
11IQ|1|18|G|1033
11IQ|1|18|A|1034
11IQ|1|18|A|1035
11IQ|1|18|A|1036
11IQ|1|18|G|1037
*
11IQ|1|18|C|1078
11IQ|1|18|C|1079
11IQ|1|18|A|1080
11IQ|1|18|U|1081
11IQ|1|18|A|1082
11IQ|1|18|A|1083
11IQ|1|18|A|1084
11IQ|1|18|C|1085
11IQ|1|18|G|1086
11IQ|1|18|A|1087
11IQ|1|18|U|1088
11IQ|1|18|G|1089
*
11IQ|1|18|U|1160
11IQ|1|18|U|1161

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 41

eL41

Chain DD

Small ribosomal subunit protein uS17

Chain FF

40S ribosomal protein S13

Chain GG

Small ribosomal subunit protein uS11

Chain QQ

40S ribosomal protein S15a

Chain RR

40S ribosomal protein S23

Chain UU

eS26

Chain ff

60S ribosomal protein L37a