J4_11IQ_005

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

11IQ|1|28|A|2366, 11IQ|1|28|U|2369, 11IQ|1|28|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11IQ_005 not in the Motif Atlas

Homologous match to J4_8GLP_004

Geometric discrepancy: 0.0465

The information below is about J4_8GLP_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11IQ|1|28|C|2365
11IQ|1|28|A|2366
11IQ|1|28|A|2367
11IQ|1|28|A|2368
11IQ|1|28|U|2369
11IQ|1|28|A|2370
11IQ|1|28|U|2371
*
11IQ|1|28|A|2389
11IQ|1|28|G|2390
11IQ|1|28|G|2391
*
11IQ|1|28|C|2824
11IQ|1|28|A|2825
11IQ|1|28|U|2826
11IQ|1|28|G|2827
11IQ|1|28|U|2828
11IQ|1|28|U|2829
*
11IQ|1|28|A|3856
11IQ|1|28|G|3857

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

Large ribosomal subunit protein uL22

Chain 19

60S ribosomal protein L19

Chain 31

60S ribosomal protein L31