J4_11JJ_002

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

11JJ|1|18|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11JJ_002 not in the Motif Atlas

Homologous match to J4_9PN5_010

Geometric discrepancy: 0.2137

The information below is about J4_9PN5_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.4

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

4

Unit IDs

11JJ|1|18|C|98
11JJ|1|18|A|99
11JJ|1|18|U|100
11JJ|1|18|U|101
11JJ|1|18|A|102
11JJ|1|18|A|103
11JJ|1|18|A|104
11JJ|1|18|U|105
11JJ|1|18|C|106
*
11JJ|1|18|G|355
11JJ|1|18|C|356
11JJ|1|18|C|357
*
11JJ|1|18|G|405
11JJ|1|18|U|406
11JJ|1|18|G|407
11JJ|1|18|A|408
11JJ|1|18|C|409
*
11JJ|1|18|G|431
11JJ|1|18|G|432

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain RR

40S ribosomal protein S23

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8