J4_11JJ_010
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11JJ_010 not in the Motif Atlas
- Homologous match to J4_9AXU_007
- Geometric discrepancy: 0.0727
- The information below is about J4_9AXU_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.3
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
11JJ|1|28|G|3634
11JJ|1|28|A|3635
11JJ|1|28|C|3636
11JJ|1|28|U|3637
11JJ|1|28|G|3638
*
11JJ|1|28|C|3650
11JJ|1|28|A|3651
11JJ|1|28|A|3652
11JJ|1|28|A|3653
11JJ|1|28|G|3654
*
11JJ|1|28|U|3690
11JJ|1|28|G|3691
11JJ|1|28|A|3692
11JJ|1|28|U|3693
11JJ|1|28|U|3694
*
11JJ|1|28|A|3821
11JJ|1|28|U|3822
11JJ|1|28|G|3823
11JJ|1|28|A|3824
11JJ|1|28|A|3825
11JJ|1|28|C|3826
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 41
- eL41
- Chain L8
- 60S ribosomal protein L8
- Chain ff
- 60S ribosomal protein L37a
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