J4_11KH_007
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 11KH|1|28|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11KH_007 not in the Motif Atlas
- Homologous match to J4_9PN5_004
- Geometric discrepancy: 0.0913
- The information below is about J4_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.2
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
11KH|1|28|G|2406
11KH|1|28|G|2407
11KH|1|28|U|2408
11KH|1|28|U|2409
11KH|1|28|C|2410
*
11KH|1|28|G|2434
11KH|1|28|G|2435
11KH|1|28|U|2436
11KH|1|28|C|2437
11KH|1|28|A|2438
11KH|1|28|G|2439
*
11KH|1|28|U|2538
11KH|1|28|C|2539
*
11KH|1|28|G|2777
11KH|1|28|G|2778
11KH|1|28|C|2779
11KH|1|28|C|2780
11KH|1|28|G|2781
11KH|1|28|U|2782
11KH|1|28|A|2783
11KH|1|28|C|2784
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain 34
- 60S ribosomal protein L34
- Chain 35
- 60S ribosomal protein L35
- Chain 37
- 60S ribosomal protein L37
- Chain 38
- Large ribosomal subunit protein eL38
- Chain 39
- 60S ribosomal protein L39
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Proliferation-associated protein 2G4
- Chain cc
- Large ribosomal subunit protein uL23
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