J4_12DP_023

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

12DP|1|2A|A|2288, 12DP|1|2A|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DP_023 not in the Motif Atlas

Homologous match to J4_8B0X_013

Geometric discrepancy: 0.1229

The information below is about J4_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

12DP|1|2A|C|2285
12DP|1|2A|A|2286
12DP|1|2A|A|2287
12DP|1|2A|A|2288
12DP|1|2A|G|2289
*
12DP|1|2A|C|2343
12DP|1|2A|U|2344
12DP|1|2A|G|2345
12DP|1|2A|A|2346
12DP|1|2A|C|2347
*
12DP|1|2A|G|2370
12DP|1|2A|G|2371
12DP|1|2A|G|2372
*
12DP|1|2A|C|2381
12DP|1|2A|G|2382
12DP|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18