J4_12DQ_022

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

12DQ|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DQ_022 not in the Motif Atlas

Homologous match to J4_8B0X_013

Geometric discrepancy: 0.1435

The information below is about J4_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

12DQ|1|2A|C|2285
12DQ|1|2A|A|2286
12DQ|1|2A|A|2287
12DQ|1|2A|A|2288
12DQ|1|2A|G|2289
*
12DQ|1|2A|C|2343
12DQ|1|2A|U|2344
12DQ|1|2A|G|2345
12DQ|1|2A|A|2346
12DQ|1|2A|C|2347
*
12DQ|1|2A|G|2370
12DQ|1|2A|G|2371
12DQ|1|2A|G|2372
*
12DQ|1|2A|C|2381
12DQ|1|2A|G|2382
12DQ|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18