J4_1FFK_006

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FFK_006 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0238

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1FFK|1|0|G|1828
1FFK|1|0|A|1829
1FFK|1|0|C|1830
1FFK|1|0|U|1831
1FFK|1|0|G|1832
*
1FFK|1|0|C|1844
1FFK|1|0|A|1845
1FFK|1|0|U|1846
1FFK|1|0|A|1847
1FFK|1|0|G|1848
*
1FFK|1|0|U|1883
1FFK|1|0|G|1884
1FFK|1|0|A|1885
1FFK|1|0|A|1886
1FFK|1|0|U|1887
*
1FFK|1|0|A|2015
1FFK|1|0|U|2016
1FFK|1|0|U|2017
1FFK|1|0|A|2018
1FFK|1|0|A|2019
1FFK|1|0|C|2020

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain W

RIBOSOMAL PROTEIN L37AE