J4_1FFK_008

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

1FFK|1|0|U|2322, 1FFK|1|0|U|2419

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FFK_008 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0433

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

1FFK|1|0|C|2319
1FFK|1|0|U|2320
1FFK|1|0|A|2321
1FFK|1|0|U|2322
1FFK|1|0|G|2323
*
1FFK|1|0|U|2377
1FFK|1|0|U|2378
1FFK|1|0|G|2379
1FFK|1|0|A|2380
1FFK|1|0|C|2381
*
1FFK|1|0|G|2407
1FFK|1|0|A|2408
1FFK|1|0|C|2409
*
1FFK|1|0|G|2418
1FFK|1|0|U|2419
1FFK|1|0|G|2420

Current chains

Chain 0

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L21E

Chain Z

RIBOSOMAL PROTEIN L44E