J4_1FFZ_001

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

1FFZ|1|A|U|2322, 1FFZ|1|A|U|2419

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FFZ_001 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0555

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

1FFZ|1|A|C|2319
1FFZ|1|A|U|2320
1FFZ|1|A|A|2321
1FFZ|1|A|U|2322
1FFZ|1|A|G|2323
*
1FFZ|1|A|U|2377
1FFZ|1|A|U|2378
1FFZ|1|A|G|2379
1FFZ|1|A|A|2380
1FFZ|1|A|C|2381
*
1FFZ|1|A|G|2407
1FFZ|1|A|A|2408
1FFZ|1|A|C|2409
*
1FFZ|1|A|G|2418
1FFZ|1|A|U|2419
1FFZ|1|A|G|2420

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains