J4_1FG0_001

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

1FG0|1|A|U|2322, 1FG0|1|A|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FG0_001 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0538

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

1FG0|1|A|C|2319
1FG0|1|A|U|2320
1FG0|1|A|A|2321
1FG0|1|A|U|2322
1FG0|1|A|G|2323
*
1FG0|1|A|U|2377
1FG0|1|A|U|2378
1FG0|1|A|G|2379
1FG0|1|A|A|2380
1FG0|1|A|C|2381
*
1FG0|1|A|G|2407
1FG0|1|A|A|2408
1FG0|1|A|C|2409
*
1FG0|1|A|G|2418
1FG0|1|A|U|2419
1FG0|1|A|G|2420

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains