J4_1FJG_002

3D structure

PDB id

1FJG (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FJG_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.047

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1FJG|1|A|G|142
1FJG|1|A|A|143
1FJG|1|A|G|144
*
1FJG|1|A|C|178
1FJG|1|A|A|179
1FJG|1|A|U|180
1FJG|1|A|G|181
1FJG|1|A|U|182
1FJG|1|A|G|183
*
1FJG|1|A|C|194
1FJG|1|A|A|195
1FJG|1|A|A|196
1FJG|1|A|A|197
1FJG|1|A|G|198
*
1FJG|1|A|C|219
1FJG|1|A|G|220
1FJG|1|A|C|221

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20