J4_1HR0_002

3D structure

PDB id

1HR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1HR0_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0722

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1HR0|1|A|G|142
1HR0|1|A|A|143
1HR0|1|A|G|144
*
1HR0|1|A|C|178
1HR0|1|A|A|179
1HR0|1|A|U|180
1HR0|1|A|G|181
1HR0|1|A|U|182
1HR0|1|A|G|183
*
1HR0|1|A|C|194
1HR0|1|A|A|195
1HR0|1|A|A|196
1HR0|1|A|A|197
1HR0|1|A|G|198
*
1HR0|1|A|C|219
1HR0|1|A|G|220
1HR0|1|A|C|221

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20