J4_1I94_002

3D structure

PDB id

1I94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1I94_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.15

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1I94|1|A|G|136
1I94|1|A|A|137
1I94|1|A|G|138
*
1I94|1|A|C|172
1I94|1|A|A|173
1I94|1|A|U|174
1I94|1|A|G|175
1I94|1|A|U|176
1I94|1|A|G|177
*
1I94|1|A|C|200
1I94|1|A|A|201
1I94|1|A|A|202
1I94|1|A|A|203
1I94|1|A|G|204
*
1I94|1|A|C|214
1I94|1|A|G|215
1I94|1|A|C|216

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20