J4_1I97_005

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

1I97|1|A|A|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1I97_005 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1826

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1I97|1|A|G|136
1I97|1|A|A|137
1I97|1|A|G|138
*
1I97|1|A|C|172
1I97|1|A|A|173
1I97|1|A|U|174
1I97|1|A|G|175
1I97|1|A|U|176
1I97|1|A|G|177
*
1I97|1|A|C|200
1I97|1|A|A|201
1I97|1|A|A|202
1I97|1|A|A|203
1I97|1|A|G|204
*
1I97|1|A|C|214
1I97|1|A|G|215
1I97|1|A|C|216

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20