3D structure

PDB id
1IBK (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.31 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1IBK_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.0658
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

1IBK|1|A|G|142
1IBK|1|A|A|143
1IBK|1|A|G|144
*
1IBK|1|A|C|178
1IBK|1|A|A|179
1IBK|1|A|U|180
1IBK|1|A|G|181
1IBK|1|A|U|182
1IBK|1|A|G|183
*
1IBK|1|A|C|194
1IBK|1|A|A|195
1IBK|1|A|A|196
1IBK|1|A|A|197
1IBK|1|A|G|198
*
1IBK|1|A|C|219
1IBK|1|A|G|220
1IBK|1|A|C|221

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain T
30S RIBOSOMAL PROTEIN S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1925 s