J4_1IBM_002

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1IBM_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0686

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1IBM|1|A|G|142
1IBM|1|A|A|143
1IBM|1|A|G|144
*
1IBM|1|A|C|178
1IBM|1|A|A|179
1IBM|1|A|U|180
1IBM|1|A|G|181
1IBM|1|A|U|182
1IBM|1|A|G|183
*
1IBM|1|A|C|194
1IBM|1|A|A|195
1IBM|1|A|A|196
1IBM|1|A|A|197
1IBM|1|A|G|198
*
1IBM|1|A|C|219
1IBM|1|A|G|220
1IBM|1|A|C|221

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20